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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rgu 356 Dipeptidyl peptidase 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rgu 356Dipeptidyl peptidase 4 / 1.095
3g0c RUFDipeptidyl peptidase 4 / 0.763
4a5s N7FDipeptidyl peptidase 4 / 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2aj8 SC3Dipeptidyl peptidase 4 / 0.737
3g0d XIHDipeptidyl peptidase 4 / 0.725
3g0g RUMDipeptidyl peptidase 4 / 0.700
4ffw 715Dipeptidyl peptidase 4 / 0.697
3opm LUIDipeptidyl peptidase 4 / 0.682
4dtc D5CDipeptidyl peptidase 4 / 0.672
3vjl W94Dipeptidyl peptidase 4 / 0.668
4g1f 0WGDipeptidyl peptidase 4 / 0.667
4e5f 0N7Polymerase acidic protein / 0.660