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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r9r NAP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 1.396
4jta NAPVoltage-gated potassium channel subunit beta-2 / 1.372
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 1.212
3lut NAPVoltage-gated potassium channel subunit beta-2 / 1.067
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 0.974
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 0.969
1lqa NDPProtein tas / 0.923
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.872
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.823
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.808
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.803
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.794
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.769
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 0.757
1pz1 NAPGeneral stress protein 69 / 0.739
3g1r NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.733
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.724
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.721
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.718
4jtq NAPAldo-keto reductase family 1 member C2 / 0.707
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.706
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.702
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.700
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.695
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.693
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.687
1s1r NAPAldo-keto reductase family 1 member C3 / 0.683
1s1p NAPAldo-keto reductase family 1 member C3 / 0.680
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.679
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.678
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.676
2hdj NDPAldo-keto reductase family 1 member C2 / 0.674
1og6 NAPOxidoreductase YdhF 1 0.664
4l1x NAPAldo-keto reductase family 1 member C2 / 0.664
2vdg NDPAldose reductase 1.1.1.21 0.663
1ye6 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.662
3ln3 NADAldo-keto reductase family 1 member C13 / 0.660
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.658
2bgs NDPAldose reductase 1.1.1.21 0.657