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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jdc CAO Probable acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jdc CAOProbable acetyltransferase / 1.452
2bsw CAOProbable acetyltransferase / 1.393
2jdd ACOProbable acetyltransferase / 1.383
5kf8 ACOPredicted acetyltransferase / 0.887
5kf9 ACOPredicted acetyltransferase / 0.886
1cjw COTSerotonin N-acetyltransferase / 0.882
5kgp ACOPredicted acetyltransferase / 0.871
5kgj ACOPredicted acetyltransferase / 0.849
5kf2 ACOPredicted acetyltransferase / 0.837
4r3k COAN-alpha-acetyltransferase 2.3.1 0.828
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.818
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.810
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.808
4cry ACOPanD regulatory factor / 0.804
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.796
1kuv CA5Serotonin N-acetyltransferase / 0.795
3mgd ACOPredicted acetyltransferase / 0.792
5kf1 ACOPredicted acetyltransferase / 0.789
3pgp ACOUncharacterized protein / 0.784
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.778
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.778
1n71 COAAac(6')-Ii protein / 0.774
2x7b COAN-alpha-acetyltransferase 2.3.1 0.774
2ob0 ACON-alpha-acetyltransferase 50 / 0.770
2cns ACORibosomal-protein-alanine acetyltransferase / 0.769
1fy7 COAHistone acetyltransferase ESA1 / 0.765
1mja COAHistone acetyltransferase ESA1 / 0.764
4cs0 ACOPanD regulatory factor / 0.758
1mjb ACOHistone acetyltransferase ESA1 / 0.757
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.755
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.752
2r8v ACOAmino-acid acetyltransferase / 0.751
4jwp ACOGCN5-related N-acetyltransferase / 0.749
4kub COAUncharacterized protein / 0.748
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.746
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.744
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.743
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.742
2a4n COAAac(6')-Ii protein / 0.738
4qvt ACOAcetyltransferase YpeA 2.3.1 0.736
2ozu ACOHistone acetyltransferase KAT6A / 0.735
1ib1 COTSerotonin N-acetyltransferase / 0.734
5c88 COAN-alpha-acetyltransferase / 0.733
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.732
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.730
3s6f COAUncharacterized protein / 0.729
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.726
1wwz ACOUncharacterized protein / 0.724
3fbu COAAcetyltransferase, GNAT family / 0.724
3te4 ACODopamine N-acetyltransferase / 0.724
1qsm ACOHistone acetyltransferase HPA2 / 0.722
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.722
3r95 ACOMccE protein / 0.720
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.720
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.720
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.718
1mj9 COAHistone acetyltransferase ESA1 / 0.717
5kf1 COAPredicted acetyltransferase / 0.717
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.716
1qsr ACOHAT A1 / 0.714
2ge3 ACOProbable acetyltransferase / 0.714
3r96 ACOMccE protein / 0.713
4crz ACOPanD regulatory factor / 0.713
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.710
2jev NHQDiamine acetyltransferase 1 / 0.707
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.706
2psw COAN-alpha-acetyltransferase 50 / 0.706
3zj0 ACOPutative acetyltransferase OgpAT / 0.703
1j4j ACOAcetyltransferase 2.3.1 0.702
3r1k COAN-acetyltransferase Eis / 0.700
4r87 COASpermidine N(1)-acetyltransferase / 0.692
2cy2 ACOProbable acetyltransferase / 0.691
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.689
1b87 ACOAac(6')-Ii protein / 0.688
2y0m ACOHistone acetyltransferase KAT8 / 0.688
2b3v ACODiamine acetyltransferase 1 / 0.687
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.687
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.686
5kf9 COAPredicted acetyltransferase / 0.685
5kf8 COAPredicted acetyltransferase / 0.682
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.681
5kgh ACOPredicted acetyltransferase / 0.680
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.679
3gy9 COAGCN5-related N-acetyltransferase / 0.679
1l0c COTSerotonin N-acetyltransferase / 0.677
2fxf ACODiamine acetyltransferase 1 / 0.677
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.676
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.676
3exn ACOProbable acetyltransferase / 0.670
5kf2 COAPredicted acetyltransferase / 0.670
3q33 ACOHistone acetyltransferase RTT109 2.3.1.48 0.668
2giv ACOHistone acetyltransferase KAT8 / 0.667
2bue COAAAC(6')-Ib / 0.666
1kux CA3Serotonin N-acetyltransferase / 0.662
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.661
3f0a ACOSpermidine N(1)-acetyltransferase / 0.661
2ozg COAGCN5-related N-acetyltransferase / 0.657
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.657
1v0c ACOAAC(6')-Ib / 0.653
4ava ACOAcetyltransferase Pat 2.3.1 0.653
1pu9 COAHAT A1 / 0.652
3tfy COAN-alpha-acetyltransferase 50 2.3.1 0.652
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.652
4jxr ACOAcetyltransferase / 0.652
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.651
4ag9 COAGlucosamine 6-phosphate N-acetyltransferase / 0.651
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.651