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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iws NP4 ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2iws NP4ATP-dependent molecular chaperone HSP82 / 1.006
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.854
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.844
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.840
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.816
3inx JZCHeat shock protein HSP 90-alpha / 0.807
2gfd RDAEndoplasmin / 0.805
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.782
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.771
1qy8 RDIEndoplasmin / 0.761
1u0z RDCEndoplasmin / 0.758
4egk RDCHeat shock protein HSP 90-alpha / 0.745
4e5i 0N9Polymerase acidic protein / 0.744
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.733
2yi5 YI5Heat shock protein HSP 90-alpha / 0.724
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.714
2wer RDCATP-dependent molecular chaperone HSP82 / 0.702
2ye4 2FYHeat shock protein HSP 90-alpha / 0.691
3k99 PFTHeat shock protein HSP 90-alpha / 0.690
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.690
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.683
3inw JZBHeat shock protein HSP 90-alpha / 0.680
3hhu 819Heat shock protein HSP 90-alpha / 0.679
2q8i RDC[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial 2.7.11.2 0.678
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.678
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.676
3k97 4CDHeat shock protein HSP 90-alpha / 0.670
2yk2 YJWHeat shock protein HSP 90-alpha / 0.668
2yei XQIHeat shock protein HSP 90-alpha / 0.663
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.660
4afj SJJGlycogen synthase kinase-3 beta 2.7.11.26 0.652
4b7p 9UNHeat shock protein HSP 90-alpha / 0.652
4efu EFUHeat shock protein HSP 90-alpha / 0.650