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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gvd FKP Adenylate cyclase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gvd FKPAdenylate cyclase type 2 / 0.969
2gvd FKPAdenylate cyclase type 5 / 0.969
1u0h FOKAdenylate cyclase type 2 / 0.838
1u0h FOKAdenylate cyclase type 5 / 0.838
1cjt FOKAdenylate cyclase type 2 / 0.817
1cjt FOKAdenylate cyclase type 5 / 0.817
3c16 FOKAdenylate cyclase type 2 / 0.813
3c16 FOKAdenylate cyclase type 5 / 0.813
1cul FOKAdenylate cyclase type 2 / 0.806
1cul FOKAdenylate cyclase type 5 / 0.806
1cs4 FOKAdenylate cyclase type 2 / 0.787
1cs4 FOKAdenylate cyclase type 5 / 0.787
1tl7 FOKAdenylate cyclase type 2 / 0.786
1tl7 FOKAdenylate cyclase type 5 / 0.786
1cjv FOKAdenylate cyclase type 2 / 0.785
1cjv FOKAdenylate cyclase type 5 / 0.785
3maa FKPAdenylate cyclase type 2 / 0.782
3maa FKPAdenylate cyclase type 5 / 0.782
1cjk FOKAdenylate cyclase type 2 / 0.775
1cjk FOKAdenylate cyclase type 5 / 0.775
1cju FOKAdenylate cyclase type 2 / 0.761
1cju FOKAdenylate cyclase type 5 / 0.761
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3c15 FOKAdenylate cyclase type 2 / 0.739
3c15 FOKAdenylate cyclase type 5 / 0.739
3c14 FOKAdenylate cyclase type 2 / 0.731
3c14 FOKAdenylate cyclase type 5 / 0.731
4e5f 0N7Polymerase acidic protein / 0.660