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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ewv ADP Twitching motility protein PilT

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ewv ADPTwitching motility protein PilT / 0.842
3ews ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.723
2jj1 ADPATP synthase subunit alpha, mitochondrial / 0.703
2jj1 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.703
1wbb ADPDNA mismatch repair protein MutS / 0.680
3q5d GDPAtlastin-1 3.6.5 0.679
4hse ADPChaperone protein ClpB / 0.676
2jiz ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.673
2qen ADPWalker-Type ATPase / 0.670
2xsz ATPRuvB-like 2 3.6.4.12 0.670
2whq HI6Acetylcholinesterase 3.1.1.7 0.668
3qi2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.668
4d81 ADPAAA ATPase, central domain protein / 0.668
1in5 ADPHolliday junction ATP-dependent DNA helicase RuvB / 0.667
1fnn ADPORC1-type DNA replication protein / 0.666
2fna ADPUncharacterized protein / 0.664
3l9h ADPKinesin-like protein KIF11 / 0.664
4ww0 ADPATP-dependent zinc metalloprotease FtsH / 0.664
2jj2 ADPATP synthase subunit alpha, mitochondrial / 0.663
2jj2 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.663
3hu1 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.662
2v7q ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.660
4oi4 ATPmRNA cleavage and polyadenylation factor CLP1 / 0.658
3hu2 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.653
4mfe BTNPyruvate carboxylase / 0.653
2yeg XQGHeat shock protein HSP 90-alpha / 0.651
4loc BTNPyruvate carboxylase / 0.651
2ce7 ADPATP-dependent zinc metalloprotease FtsH / 0.650
2pg2 ADPKinesin-like protein KIF11 / 0.650