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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cdc NAP Glucose 1-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cdc NAPGlucose 1-dehydrogenase / 1.107
2cda NAPGlucose 1-dehydrogenase / 0.898
1pl8 NADSorbitol dehydrogenase 1.1.1.14 0.740
3m6i NADL-arabinitol 4-dehydrogenase 1.1.1.12 0.721
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.717
1pl6 NADSorbitol dehydrogenase 1.1.1.14 0.710
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.706
3kbo NDPGlyoxylate/hydroxypyruvate reductase A / 0.706
2vwh NAPGlucose 1-dehydrogenase / 0.701
1kol NADGlutathione-independent formaldehyde dehydrogenase / 0.699
4l0q NADAlcohol dehydrogenase class-3 / 0.698
4oqy NDP(S)-imine reductase / 0.698
1ma0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.695
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.694
1mp0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.692
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.692
2ejv NADL-threonine 3-dehydrogenase / 0.688
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.687
1a71 NADAlcohol dehydrogenase E chain 1.1.1.1 0.686
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.684
4gl4 NAIAlcohol dehydrogenase class-3 / 0.683
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.683
1heu NADAlcohol dehydrogenase E chain 1.1.1.1 0.682
2jhf NADAlcohol dehydrogenase E chain 1.1.1.1 0.682
1hf3 NADAlcohol dehydrogenase E chain 1.1.1.1 0.679
2d8a NADL-threonine 3-dehydrogenase / 0.678
4nfh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.678
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.678
4j43 NADUncharacterized protein / 0.676
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.675
2dph NADFormaldehyde dismutase / 0.671
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.670
3wle NAD(R)-specific carbonyl reductase / 0.670
4jji NADAlcohol dehydrogenase class-3 / 0.670
1x7d NADPutative ornithine cyclodeaminase / 0.669
3wid NAPGlucose 1-dehydrogenase / 0.668
4ng5 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.668
4xcv NDPProbable hydroxyacid dehydrogenase protein / 0.666
1pjc NADAlanine dehydrogenase / 0.664
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.664
1f8f NADBenzyl alcohol dehydrogenase / 0.663
3oq6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
4oaq NDPR-specific carbonyl reductase / 0.663
5cds NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5cdt NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5kcz NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.663
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.662
4dwv NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
5cdg NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.662
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.661
2fzw NADAlcohol dehydrogenase class-3 1.1.1.1 0.661
3cos NADAlcohol dehydrogenase 4 1.1.1.1 0.661
3uko NADAlcohol dehydrogenase class-3 / 0.661
4j49 NADUncharacterized protein / 0.661
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.660
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.660
3tqh NDPQuinone oxidoreductase / 0.659
3wie DN4Glucose 1-dehydrogenase / 0.659
4nd4 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.659
3two NDPMannitol dehydrogenase / 0.657
1hdz NADAlcohol dehydrogenase 1B 1.1.1.1 0.656
2dfv NADL-threonine 3-dehydrogenase / 0.656
4nd3 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.656
1b8v NADMalate dehydrogenase / 0.655
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.655
6adh NADAlcohol dehydrogenase E chain 1.1.1.1 0.655
1axg NADAlcohol dehydrogenase E chain 1.1.1.1 0.654
1p0f NAPNADP-dependent alcohol dehydrogenase 1.1.1.2 0.654
2fn7 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.654
4cpd NADAlcohol dehydrogenase / 0.654
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.654
1e3l NADAlcohol dehydrogenase 4 1.1.1.1 0.653
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.653
1ib6 NADMalate dehydrogenase / 0.651
1uxk NADMalate dehydrogenase / 0.651
1wze NADMalate dehydrogenase / 0.650
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.650