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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c92 TP6 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.280
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.103
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.048
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.008
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.963
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.955
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.887
2c9b PUG6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.844
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.841
2c9d PHR6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.825
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.812
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.794
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.784
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.779
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.777
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.772
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.767
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.756
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.752
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.743
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.740
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.733
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.732
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.692
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.675
2f59 INI6,7-dimethyl-8-ribityllumazine synthase 1 / 0.672
3u9e COALmo1369 protein / 0.666
3gyu DL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.650