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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2byc FMN Blue-light receptor of the BLUF-family

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2byc FMNBlue-light receptor of the BLUF-family / 1.049
2hfo FMNActivator of photopigment and puc expression / 0.866
1x0p FADTll0078 protein / 0.826
3gg1 FMNUncharacterized protein / 0.781
2hfn FMNActivator of photopigment and puc expression / 0.764
1yrx FMNAppA protein / 0.750
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.744
3gfx FMNUncharacterized protein / 0.742
3gg0 FMNUncharacterized protein / 0.742
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.730
2z6d FMNPhototropin-2 2.7.11.1 0.715
1kif FADD-amino-acid oxidase 1.4.3.3 0.713
4hj6 FMNLOV protein / 0.712
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.708
4kuk RBFPutative blue-light photoreceptor / 0.707
2pdt FADVivid PAS protein VVD / 0.699
3eo8 FMNPutative nitroreductase / 0.691
4kuo RBFPutative blue-light photoreceptor / 0.687
2qcu FADAerobic glycerol-3-phosphate dehydrogenase 1.1.5.3 0.685
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.684
4cdm FADDeoxyribodipyrimidine photolyase / 0.683
4hh0 FMNAppA protein / 0.681
2pr5 FMNBlue-light photoreceptor / 0.680
3hji FADVivid PAS protein VVD / 0.679
4qly FMNEnone reductase CLA-ER / 0.679
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.676
3bm1 FMNPutative NAD(P)H nitroreductase YdjA / 0.675
2yg4 FADPutrescine oxidase / 0.673
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.673
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.669
3clt FADElectron transfer flavoprotein subunit alpha / 0.669
4rhe FMNFlavin prenyltransferase UbiX / 0.669
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.669
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.668
3cls FADElectron transfer flavoprotein subunit alpha / 0.668
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.667
2pan FADGlyoxylate carboligase 4.1.1.47 0.667
4ttc FMNIodotyrosine deiodinase 1 / 0.667
1ryi FADGlycine oxidase 1.4.3.19 0.666
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.665
5cho FADFlavin reductase / 0.664
3aty FMNProstaglandin F2a synthase / 0.663
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.663
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.662
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.662
1eje FMNProtein MTH_152 / 0.661
3da1 FADGlycerol-3-phosphate dehydrogenase / 0.661
1efp FADElectron transfer flavoprotein subunit alpha / 0.660
4dja FAD(6-4) photolyase / 0.660
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.658
1knp FADL-aspartate oxidase 1.4.3.16 0.657
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.657
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.655
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.654
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.654
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.653
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
3of4 FMNNitroreductase / 0.652
3sfe FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.652
1h83 FADPolyamine oxidase 1.5.3.14 0.651
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.651
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.651
4rsl FADFructosyl peptide oxidase / 0.650