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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2aib ERG Beta-elicitin cinnamomin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2aib ERGBeta-elicitin cinnamomin / 1.249
1lri CLRBeta-elicitin cryptogein / 0.948
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2piu DHTAndrogen receptor / 0.704
3gki CLRNiemann-Pick C1 protein / 0.684
1xu9 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.683
4j24 ESTEstrogen receptor beta / 0.683
4j26 ESTEstrogen receptor beta / 0.672
2d06 ESTSulfotransferase 1A1 2.8.2.1 0.670
3gyt DL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.670
2y01 Y01Beta-1 adrenergic receptor / 0.669
1gwr ESTEstrogen receptor / 0.666
2y02 Y01Beta-1 adrenergic receptor / 0.665
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.662
2b04 CHOPhospholipase A2, major isoenzyme 3.1.1.4 0.662
3gkj HC3Niemann-Pick C1 protein / 0.662
5xra CLRCannabinoid receptor 1 / 0.662
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.659
3ols ESTEstrogen receptor beta / 0.657
3gyu DL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.656
1n83 CLRNuclear receptor ROR-alpha / 0.653
1s0z EB1Vitamin D3 receptor / 0.653
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.652
1q20 PLOSulfotransferase family cytosolic 2B member 1 2.8.2.2 0.650