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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ab2 SNL Mineralocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ab2 SNLMineralocorticoid receptor / 1.215
2aa6 STRMineralocorticoid receptor / 0.968
2aa2 AS4Mineralocorticoid receptor / 0.923
2aa5 STRMineralocorticoid receptor / 0.902
2aax PDNMineralocorticoid receptor / 0.882
2oax SNLMineralocorticoid receptor / 0.857
2aa7 1CAMineralocorticoid receptor / 0.831
1ya3 STRMineralocorticoid receptor / 0.829
2abi 1CAMineralocorticoid receptor / 0.774
3d90 NOGProgesterone receptor / 0.768
1y9r 1CAMineralocorticoid receptor / 0.761
2w8y 486Progesterone receptor / 0.760
1sr7 MOFProgesterone receptor / 0.749
4a2j AS0Progesterone receptor / 0.747
3vhu SNLMineralocorticoid receptor / 0.745
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1sqn NDRProgesterone receptor / 0.736
3zqt TESAndrogen receptor / 0.736
3mne DEXGlucocorticoid receptor / 0.730
2ovh AS0Progesterone receptor / 0.723
4p6x HCYGlucocorticoid receptor / 0.721
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.711
2ovm AS0Progesterone receptor / 0.710
1gs4 ZK5Androgen receptor / 0.707
1qyx ASDEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.683
1d2s DHTSex hormone-binding globulin / 0.678
1lke DOGBilin-binding protein / 0.678
3mnp DEXGlucocorticoid receptor / 0.677
2jn3 JN3Fatty acid-binding protein, liver / 0.676
3w5r LOAVitamin D3 receptor / 0.673
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.671
3w5p 4OAVitamin D3 receptor / 0.671
2w8y NDRProgesterone receptor / 0.665
4apu A2KProgesterone receptor / 0.663
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.658
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 0.657
2yhd TESAndrogen receptor / 0.653
3fzw EQUSteroid Delta-isomerase 5.3.3.1 0.653
2b04 CHOPhospholipase A2, major isoenzyme 3.1.1.4 0.652
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.652
4k7a DHTAndrogen receptor / 0.650