Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zmt RNO Halohydrin dehalogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zmt RNOHalohydrin dehalogenase / 0.842
1px0 RPNHalohydrin dehalogenase / 0.792
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4e5f 0N7Polymerase acidic protein / 0.652
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.652