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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ycg FMN Nitric oxide reductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ycg FMNNitric oxide reductase 1 1.115
1ycf FMNNitric oxide reductase 1 1.012
1ych FMNNitric oxide reductase 1 1.003
2ohi FMNType A flavoprotein FprA 1 0.934
2ohj FMNType A flavoprotein FprA 1 0.896
2ohh FMNType A flavoprotein FprA 1 0.887
2q9u FMNA-type flavoprotein / 0.870
1fue FMNFlavodoxin / 0.728
4bmo FMNProtein NrdI / 0.727
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.726
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.723
1yob FMNFlavodoxin 2 / 0.722
4bmp FMNProtein NrdI / 0.718
4y7c FMNNADPH--cytochrome P450 reductase / 0.715
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.714
3n3b FMNProtein NrdI / 0.712
3rpe FADPutative modulator of drug activity / 0.710
1akw FMNFlavodoxin / 0.708
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.708
2b3d FADModulator of drug activity B / 0.707
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.706
1wsb FMNFlavodoxin / 0.706
3f6s FMNFlavodoxin / 0.706
3n39 FMNProtein NrdI / 0.705
1j8q FMNFlavodoxin / 0.704
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.703
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.702
1t5b FMNFMN-dependent NADH-azoreductase / 0.700
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.700
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.698
3qe2 FMNNADPH--cytochrome P450 reductase / 0.697
3n3a FMNProtein NrdI / 0.694
2bf4 FMNNADPH--cytochrome P450 reductase / 0.692
4r81 FMNPredicted NADH dehydrogenase / 0.691
1azl FMNFlavodoxin / 0.689
3esz FMNFlavodoxin / 0.686
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.686
2fcr FMNFlavodoxin / 0.684
5tgz FMNCannabinoid receptor 1 / 0.684
1ja0 FMNNADPH--cytochrome P450 reductase / 0.683
2v5v FMNFlavodoxin / 0.682
2v5u FMNFlavodoxin / 0.681
1akr FMNFlavodoxin / 0.679
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.678
4oxx FMNCindoxin / 0.677
1vhn FMNtRNA-dihydrouridine synthase / 0.676
2fx2 FMNFlavodoxin / 0.675
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.675
1amo FMNNADPH--cytochrome P450 reductase / 0.673
3qfr FMNNADPH--cytochrome P450 reductase / 0.673
4yao FMNNADPH--cytochrome P450 reductase / 0.673
1ofv FMNFlavodoxin / 0.672
1xyy FMNFlavodoxin / 0.672
2bn4 FMNNADPH--cytochrome P450 reductase / 0.671
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.671
3in6 FMNUncharacterized protein / 0.669
3ojx FMNNADPH--cytochrome P450 reductase / 0.669
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.669
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.667
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.667
1ahn FMNFlavodoxin 1 / 0.666
1fx1 FMNFlavodoxin / 0.666
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
4j8p FMNFlavodoxin / 0.661
1czn FMNFlavodoxin / 0.660
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.658
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.658
3klb FMNUncharacterized protein / 0.658
4nmc FADBifunctional protein PutA / 0.658
2z9d FMNFMN-dependent NADH-azoreductase / 0.657
3f90 FMNFlavodoxin / 0.656
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.655
3ojw FMNNADPH--cytochrome P450 reductase / 0.655
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.655
3esy FMNFlavodoxin / 0.652
1c7f FMNFlavodoxin / 0.650
3f6r FMNFlavodoxin / 0.650