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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xyv FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xyv FMNFlavodoxin / 1.161
2fx2 FMNFlavodoxin / 1.106
1wsb FMNFlavodoxin / 1.080
1akr FMNFlavodoxin / 1.043
1j8q FMNFlavodoxin / 1.042
1azl FMNFlavodoxin / 1.018
1akw FMNFlavodoxin / 1.014
1c7f FMNFlavodoxin / 1.003
3f6s FMNFlavodoxin / 0.982
1j9g FMNFlavodoxin / 0.972
1ahn FMNFlavodoxin 1 / 0.952
1aku FMNFlavodoxin / 0.931
1xyy FMNFlavodoxin / 0.923
3f90 FMNFlavodoxin / 0.904
5tgz FMNCannabinoid receptor 1 / 0.900
4fx2 FMNFlavodoxin / 0.889
3f6r FMNFlavodoxin / 0.888
1yob FMNFlavodoxin 2 / 0.838
3esz FMNFlavodoxin / 0.831
1czn FMNFlavodoxin / 0.822
2v5u FMNFlavodoxin / 0.822
1fx1 FMNFlavodoxin / 0.819
5xr8 FMNCannabinoid receptor 1 / 0.810
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.798
3esy FMNFlavodoxin / 0.794
2bf4 FMNNADPH--cytochrome P450 reductase / 0.788
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.783
4oxx FMNCindoxin / 0.781
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.776
2v5v FMNFlavodoxin / 0.765
3kap FMNFlavodoxin / 0.764
2bn4 FMNNADPH--cytochrome P450 reductase / 0.760
5fx2 FMNFlavodoxin / 0.757
4yao FMNNADPH--cytochrome P450 reductase / 0.753
1amo FMNNADPH--cytochrome P450 reductase / 0.749
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.744
5xra FMNCannabinoid receptor 1 / 0.744
2fcr FMNFlavodoxin / 0.741
3qe2 FMNNADPH--cytochrome P450 reductase / 0.738
3qfr FMNNADPH--cytochrome P450 reductase / 0.738
1ja0 FMNNADPH--cytochrome P450 reductase / 0.730
2ohi FMNType A flavoprotein FprA 1 0.728
4y7c FMNNADPH--cytochrome P450 reductase / 0.728
4bmo FMNProtein NrdI / 0.727
3kaq FMNFlavodoxin / 0.723
2w5u FMNFlavodoxin / 0.720
1fue FMNFlavodoxin / 0.711
3ojx FMNNADPH--cytochrome P450 reductase / 0.711
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.710
4bmp FMNProtein NrdI / 0.710
2mok FMNFlavodoxin 1 / 0.706
2q9u FMNA-type flavoprotein / 0.706
1ofv FMNFlavodoxin / 0.705
1bu5 RBFFlavodoxin / 0.702
3ojw FMNNADPH--cytochrome P450 reductase / 0.702
3n39 FMNProtein NrdI / 0.700
2ohj FMNType A flavoprotein FprA 1 0.690
1j9z FMNNADPH--cytochrome P450 reductase / 0.687
1t5b FMNFMN-dependent NADH-azoreductase / 0.672
2ohh FMNType A flavoprotein FprA 1 0.668
2c12 FADNitroalkane oxidase 1.7.3.1 0.667
3n3a FMNProtein NrdI / 0.667
3t2k FADSulfide-quinone reductase / 0.666
1ycf FMNNitric oxide reductase 1 0.665
1ych FMNNitric oxide reductase 1 0.661
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
5ahs FADAcyl-CoA dehydrogenase / 0.658
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.657
4j8p FMNFlavodoxin / 0.654
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.653
3n3b FMNProtein NrdI / 0.652