sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1xvt | COA | L-carnitine CoA-transferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1xvt | COA | L-carnitine CoA-transferase | / | 1.319 | |
| 1xvv | CCQ | L-carnitine CoA-transferase | / | 0.967 | |
| 1xa4 | COA | L-carnitine CoA-transferase | / | 0.921 | |
| 1vgq | CAO | Formyl-CoA:oxalate CoA-transferase | / | 0.727 | |
| 1t3z | CAO | Formyl-CoA:oxalate CoA-transferase | / | 0.716 | |
| 2vjm | COA | Formyl-CoA:oxalate CoA-transferase | / | 0.684 | |
| 1pt5 | ACO | Formyl-CoA:oxalate CoA-transferase | / | 0.675 | |
| 1s7n | COA | Acetyl transferase | / | 0.674 | |
| 3r96 | ACO | MccE protein | / | 0.668 | |
| 4bhw | 01K | Histone acetyltransferase p300 | / | 0.665 | |
| 1q6y | COA | Formyl-CoA:oxalate CoA-transferase | / | 0.664 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.662 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.659 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.658 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.657 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.657 | |
| 2ync | YNC | Glycylpeptide N-tetradecanoyltransferase | / | 0.656 | |
| 4a2z | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.656 | |
| 3r95 | ACO | MccE protein | / | 0.655 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.654 |