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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xvt COA L-carnitine CoA-transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1xvt COAL-carnitine CoA-transferase / 1.319
1xvv CCQL-carnitine CoA-transferase / 0.967
1xa4 COAL-carnitine CoA-transferase / 0.921
1vgq CAOFormyl-CoA:oxalate CoA-transferase / 0.727
1t3z CAOFormyl-CoA:oxalate CoA-transferase / 0.716
2vjm COAFormyl-CoA:oxalate CoA-transferase / 0.684
1pt5 ACOFormyl-CoA:oxalate CoA-transferase / 0.675
1s7n COAAcetyl transferase / 0.674
3r96 ACOMccE protein / 0.668
4bhw 01KHistone acetyltransferase p300 / 0.665
1q6y COAFormyl-CoA:oxalate CoA-transferase / 0.664
2ozu ACOHistone acetyltransferase KAT6A / 0.662
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.659
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.658
1wwz ACOUncharacterized protein / 0.657
5kf8 COAPredicted acetyltransferase / 0.657
2ync YNCGlycylpeptide N-tetradecanoyltransferase / 0.656
4a2z MYAGlycylpeptide N-tetradecanoyltransferase / 0.656
3r95 ACOMccE protein / 0.655
2fxf ACODiamine acetyltransferase 1 / 0.654