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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wv4 FMN Pyridoxine/pyridoxamine 5'-phosphate oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 1.230
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.933
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.929
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.843
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.842
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.834
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.781
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.761
2hq9 FADMll6688 protein / 0.748
2bn4 FADNADPH--cytochrome P450 reductase / 0.722
3r5y F42Uncharacterized protein / 0.707
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.704
3qfc FADNADPH--cytochrome P450 reductase / 0.698
3ojw FADNADPH--cytochrome P450 reductase / 0.696
3a3b RBFLumazine protein / 0.692
3a20 FMNFMN-binding protein / 0.685
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.685
1ja1 FADNADPH--cytochrome P450 reductase / 0.684
2qdx FADFerredoxin--NADP+ reductase / 0.684
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.682
3in6 FMNUncharacterized protein / 0.682
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.679
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.676
1pkv RBFRiboflavin synthase 2.5.1.9 0.675
2e83 FMNFMN-binding protein / 0.673
3qe2 FADNADPH--cytochrome P450 reductase / 0.673
4fk8 FADFerredoxin--NADP reductase / 0.672
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.669
4ybn FADFlavin-nucleotide-binding protein / 0.668
3a3g DLZLumazine protein / 0.667
3e4v FMNUncharacterized protein / 0.667
4f07 FADStyrene monooxygenase component 2 / 0.666
1wli FMNFMN-binding protein / 0.665
1wlk FMNFMN-binding protein / 0.665
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.665
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.665
2pia FMNPhthalate dioxygenase reductase / 0.665
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.664
3clu FADElectron transfer flavoprotein subunit alpha / 0.663
3a6q FMNFMN-binding protein / 0.662
3r5w F42Deazaflavin-dependent nitroreductase / 0.661
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.661
5cho FADFlavin reductase / 0.660
1o97 FADElectron transfer flavoprotein subunit alpha / 0.659
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.659
1ow3 GDPTransforming protein RhoA / 0.657
3is2 FADVivid PAS protein VVD / 0.654
3vy2 FMNFMN-binding protein / 0.654
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.651
3a6r FMNFMN-binding protein / 0.651
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.650
3fpk FADFerredoxin-NADP reductase / 0.650
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.650