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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v5e FAD Pyruvate oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1v5e FADPyruvate oxidase / 1.428
2dji FADPyruvate oxidase / 1.404
1pox FADPyruvate oxidase 1.2.3.3 1.095
1pow FADPyruvate oxidase 1.2.3.3 0.896
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.751
3ea4 FABAcetolactate synthase, chloroplastic 2.2.1.6 0.733
1y9d FADPyruvate oxidase 1.2.3.3 0.731
2pan FADGlyoxylate carboligase 4.1.1.47 0.728
1jsc FADAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.726
2bf4 FADNADPH--cytochrome P450 reductase / 0.701
2bn4 FADNADPH--cytochrome P450 reductase / 0.699
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.694
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.690
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.688
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.688
3qe2 FADNADPH--cytochrome P450 reductase / 0.686
2eix FADNADH-cytochrome b5 reductase / 0.685
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.685
5ahk FADAcetolactate synthase II, large subunit / 0.685
2vnj FADNADPH:ferredoxin reductase / 0.681
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.679
3in6 FMNUncharacterized protein / 0.679
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.677
5bp7 SAHSAM-dependent methyltransferase / 0.675
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.673
2bgi FADNADPH:ferredoxin reductase / 0.673
3e9y FABAcetolactate synthase, chloroplastic 2.2.1.6 0.673
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.672
5cho FADFlavin reductase / 0.672
1sqf SAMRibosomal RNA small subunit methyltransferase B 2.1.1.176 0.668
1efp FADElectron transfer flavoprotein subunit alpha / 0.667
1que FADFerredoxin--NADP reductase 1.18.1.2 0.667
3p7n FMNLight-activated DNA-binding protein EL222 / 0.667
4rhe FMNFlavin prenyltransferase UbiX / 0.667
5je3 SAHMethyl transferase / 0.667
1m2g APRNAD-dependent protein deacylase 1 / 0.666
2yxl SFG450aa long hypothetical fmu protein / 0.665
3vy2 FMNFMN-binding protein / 0.665
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.663
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.663
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.663
5epe SAHUncharacterized protein / 0.663
2vnh FADNADPH:ferredoxin reductase / 0.662
3qfr FADNADPH--cytochrome P450 reductase / 0.662
1a8p FADFerredoxin--NADP reductase / 0.661
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.660
1wlk FMNFMN-binding protein / 0.660
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.659
1usc FMNMonooxygenase / 0.658
2ptf FMNUncharacterized protein MTH_863 / 0.658
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.656
1m2j APRNAD-dependent protein deacylase 1 / 0.656
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.656
3mzi FMNActivator of photopigment and puc expression / 0.656
4bvb AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.656
3r5z F42Uncharacterized protein / 0.654
4yac NAIC alpha-dehydrogenase / 0.654
1flm FMNFMN-binding protein / 0.653
1m2k APRNAD-dependent protein deacylase 1 / 0.653
2bgj FADNADPH:ferredoxin reductase / 0.653
2e83 FMNFMN-binding protein / 0.652
3a6q FMNFMN-binding protein / 0.652
5j3w FMNSensory box protein / 0.652
4nec SAHPutative SAM-dependent methyltransferase / 0.651
3a20 FMNFMN-binding protein / 0.650
3cgb FADCoenzyme A disulfide reductase / 0.650