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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uqu UPG Trehalose-6-phosphate synthase 2.4.1.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uqu UPGTrehalose-6-phosphate synthase 2.4.1.15 1.262
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 1.201
4xsr UPGAlr3699 protein / 0.870
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.780
4f9f GDPPutative glycosyltransferase / 0.730
2g9r G27Glycogen phosphorylase, muscle form 2.4.1.1 0.679
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.665
3dva TPWPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.665
3dva TPWPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.665
1ni4 TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1.2.4.1 0.664
1ni4 TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial 1.2.4.1 0.664
4kq2 1S3Glycogen [starch] synthase isoform 2 2.4.1.11 0.658
3zhr TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.656
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.652
2c1z U2FAnthocyanidin 3-O-glucosyltransferase 2 2.4.1.115 0.651