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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u8x NAD Maltose-6'-phosphate glucosidase 3.2.1.122

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u8x NADMaltose-6'-phosphate glucosidase 3.2.1.122 1.386
3cos NADAlcohol dehydrogenase 4 1.1.1.1 0.744
4nd3 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.725
2ekl NADD-3-phosphoglycerate dehydrogenase / 0.711
1up6 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 0.709
4oaq NDPR-specific carbonyl reductase / 0.706
5a1t NAIL-lactate dehydrogenase / 0.698
1up7 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 0.695
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.694
4wlv NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.694
3wv7 ADPHmd co-occurring protein HcgE / 0.691
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.687
2vhx NADAlanine dehydrogenase 1.4.1.1 0.684
1ez4 NADL-lactate dehydrogenase 1.1.1.27 0.681
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.680
2voj NADAlanine dehydrogenase 1.4.1.1 0.673
3wfj NAD2-dehydropantoate 2-reductase / 0.671
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.669
2fn7 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.668
4dwv NAJAlcohol dehydrogenase E chain 1.1.1.1 0.667
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.667
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.665
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.665
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.663
4rqu NADAlcohol dehydrogenase class-P / 0.663
2ldb NADL-lactate dehydrogenase 1.1.1.27 0.662
2g76 NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.660
2o4c NADErythronate-4-phosphate dehydrogenase / 0.660
4i1i NADMalate dehydrogenase / 0.658
1xcb NADRedox-sensing transcriptional repressor Rex / 0.656
2ome NADC-terminal-binding protein 2 / 0.656
3h4v NAPPteridine reductase 1 1.5.1.33 0.656
3oet NADErythronate-4-phosphate dehydrogenase / 0.655
5a05 NDPGlucose-fructose oxidoreductase / 0.655
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.652
2v7g NADUrocanate hydratase 4.2.1.49 0.652
1wze NADMalate dehydrogenase / 0.651
1yba NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.651
3jv7 NADSecondary alcohol dehydrogenase / 0.651
4dl9 NADS-(hydroxymethyl)glutathione dehydrogenase / 0.651
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.651