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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tll FMN Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1tll FMNNitric oxide synthase, brain 1.14.13.39 1.282
4yao FMNNADPH--cytochrome P450 reductase / 0.947
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.928
1amo FMNNADPH--cytochrome P450 reductase / 0.912
3qfr FMNNADPH--cytochrome P450 reductase / 0.888
4oxx FMNCindoxin / 0.888
2bf4 FMNNADPH--cytochrome P450 reductase / 0.883
1ja0 FMNNADPH--cytochrome P450 reductase / 0.845
1ahn FMNFlavodoxin 1 / 0.840
3ojx FMNNADPH--cytochrome P450 reductase / 0.839
2v5u FMNFlavodoxin / 0.829
3qe2 FMNNADPH--cytochrome P450 reductase / 0.816
4bmp FMNProtein NrdI / 0.815
4y7c FMNNADPH--cytochrome P450 reductase / 0.807
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.804
1ofv FMNFlavodoxin / 0.800
1xyv FMNFlavodoxin / 0.798
1yob FMNFlavodoxin 2 / 0.794
3ojw FMNNADPH--cytochrome P450 reductase / 0.791
2fcr FMNFlavodoxin / 0.789
5tgz FMNCannabinoid receptor 1 / 0.787
4bmo FMNProtein NrdI / 0.784
1j9z FMNNADPH--cytochrome P450 reductase / 0.780
1czn FMNFlavodoxin / 0.779
2bn4 FMNNADPH--cytochrome P450 reductase / 0.779
1ja1 FMNNADPH--cytochrome P450 reductase / 0.776
3esy FMNFlavodoxin / 0.772
1akr FMNFlavodoxin / 0.771
3f6s FMNFlavodoxin / 0.769
1aku FMNFlavodoxin / 0.756
1c7f FMNFlavodoxin / 0.756
3esz FMNFlavodoxin / 0.754
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.754
1j8q FMNFlavodoxin / 0.748
1wsb FMNFlavodoxin / 0.747
1fue FMNFlavodoxin / 0.746
3n3a FMNProtein NrdI / 0.744
1akw FMNFlavodoxin / 0.743
2fx2 FMNFlavodoxin / 0.735
2v5v FMNFlavodoxin / 0.732
2w5u FMNFlavodoxin / 0.726
1azl FMNFlavodoxin / 0.719
3kap FMNFlavodoxin / 0.717
3n39 FMNProtein NrdI / 0.716
5xr8 FMNCannabinoid receptor 1 / 0.713
2ohi FMNType A flavoprotein FprA 1 0.710
2ohj FMNType A flavoprotein FprA 1 0.705
4fx2 FMNFlavodoxin / 0.703
5xra FMNCannabinoid receptor 1 / 0.703
1j9g FMNFlavodoxin / 0.696
1fx1 FMNFlavodoxin / 0.693
3kaq FMNFlavodoxin / 0.693
1xyy FMNFlavodoxin / 0.692
2ohh FMNType A flavoprotein FprA 1 0.681
1ych FMNNitric oxide reductase 1 0.680
1bu5 RBFFlavodoxin / 0.678
2b3d FADModulator of drug activity B / 0.673
2q9u FMNA-type flavoprotein / 0.671
3f90 FMNFlavodoxin / 0.671
3in6 FMNUncharacterized protein / 0.669
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.669
3cne FMNPutative protease I / 0.668
5fx2 FMNFlavodoxin / 0.668
3fcj FADNitroalkane oxidase 1.7.3.1 0.663
1ycf FMNNitric oxide reductase 1 0.662
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.662
2mt9 FMNFlavodoxin 2 / 0.658
2reh FADNitroalkane oxidase 1.7.3.1 0.658
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.654
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.654
4j8p FMNFlavodoxin / 0.653
2mok FMNFlavodoxin 1 / 0.651
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.650
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.650