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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t86 CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.828
2feu CAMCamphor 5-monooxygenase 1.14.15.1 0.823
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.805
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.798
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.798
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.795
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.792
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.792
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.791
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.788
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.787
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.781
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.781
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.780
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.775
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.771
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.770
2qbm CAMCamphor 5-monooxygenase 1.14.15.1 0.760
1geb CAMCamphor 5-monooxygenase 1.14.15.1 0.757
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.750
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.731
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.722
4cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.717
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.716
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.711
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.710
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.704
3lxi CAMCytochrome P450 / 0.690
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.688
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.677
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.676
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.671
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.671
4c9o CAMCytochrome P450 / 0.671
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.663
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.662
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660