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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pt9 TAP NAD(P) transhydrogenase, mitochondrial 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.401
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.333
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.293
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 1.196
1pnq NDPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.171
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.077
4j16 NAPNAD(P) transhydrogenase subunit beta / 0.992
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.967
2fsv NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.967
4j1t NAPNAD(P) transhydrogenase subunit beta / 0.962
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.941
1ptj NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.907
2fr8 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.890
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.863
4l4x NDPAmphI / 0.701
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.685
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.684
1yc2 APRNAD-dependent protein deacylase 2 / 0.684
1qor NDPQuinone oxidoreductase 1 / 0.675
4j7u NAPSepiapterin reductase 1.1.1.153 0.675
4j7x NAPSepiapterin reductase 1.1.1.153 0.675
1e5q NDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming] 1.5.1.10 0.668
3ai2 NDPNADPH-sorbose reductase / 0.666
5doz NDPJamJ / 0.665
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.661
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.657
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.651
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.651