2.600 Å
X-ray
2006-01-19
| Name: | NAD(P) transhydrogenase subunit alpha part 1 |
|---|---|
| ID: | PNTAA_RHORT |
| AC: | Q2RSB2 |
| Organism: | Rhodospirillum rubrum |
| Reign: | Bacteria |
| TaxID: | 269796 |
| EC Number: | 1.6.1.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 57.740 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.835 | 401.625 |
| % Hydrophobic | % Polar |
|---|---|
| 57.98 | 42.02 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 42.63 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| -22.585 | 63.9315 | 22.0404 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1N | N | VAL- 182 | 2.93 | 166.23 | H-Bond (Protein Donor) |
| O3B | OD2 | ASP- 202 | 3.01 | 161.19 | H-Bond (Ligand Donor) |
| O2B | OD2 | ASP- 202 | 2.87 | 138.7 | H-Bond (Ligand Donor) |
| O2B | OD1 | ASP- 202 | 2.78 | 148.73 | H-Bond (Ligand Donor) |
| C1B | CB | ALA- 265 | 4.32 | 0 | Hydrophobic |