2.600 Å
X-ray
2006-01-19
Name: | NAD(P) transhydrogenase subunit alpha part 1 |
---|---|
ID: | PNTAA_RHORT |
AC: | Q2RSB2 |
Organism: | Rhodospirillum rubrum |
Reign: | Bacteria |
TaxID: | 269796 |
EC Number: | 1.6.1.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 57.740 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.835 | 401.625 |
% Hydrophobic | % Polar |
---|---|
57.98 | 42.02 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 42.63 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
-22.585 | 63.9315 | 22.0404 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1N | N | VAL- 182 | 2.93 | 166.23 | H-Bond (Protein Donor) |
O3B | OD2 | ASP- 202 | 3.01 | 161.19 | H-Bond (Ligand Donor) |
O2B | OD2 | ASP- 202 | 2.87 | 138.7 | H-Bond (Ligand Donor) |
O2B | OD1 | ASP- 202 | 2.78 | 148.73 | H-Bond (Ligand Donor) |
C1B | CB | ALA- 265 | 4.32 | 0 | Hydrophobic |