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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pf7 IMH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pf7 IMHPurine nucleoside phosphorylase 2.4.2.1 0.872
1yry MSGPurine nucleoside phosphorylase 2.4.2.1 0.719
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.703
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.698
1rct NOSPurine nucleoside phosphorylase 2.4.2.1 0.690
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.690
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.680
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.676
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.674
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.671
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.664
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.654