sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 1.207 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 1.126 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.880 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.814 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.812 | |
| 3f8k | COA | Uncharacterized protein | / | 0.802 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.798 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.792 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.792 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.790 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.785 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.784 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.781 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.779 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.777 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.776 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.773 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.773 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.773 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.773 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.764 | |
| 3d2p | COA | Amino-acid acetyltransferase | / | 0.762 | |
| 3s6f | COA | Uncharacterized protein | / | 0.762 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.761 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.760 | |
| 1qsn | COA | HAT A1 | / | 0.760 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.758 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.755 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.751 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.748 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.747 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.742 | |
| 1pua | COA | HAT A1 | / | 0.741 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.740 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.739 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.738 | |
| 4kub | COA | Uncharacterized protein | / | 0.737 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.734 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.732 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.731 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.727 | |
| 1s7n | COA | Acetyl transferase | / | 0.722 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.715 | |
| 1pu9 | COA | HAT A1 | / | 0.713 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.713 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.711 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.708 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.705 | |
| 3r1k | COA | N-acetyltransferase Eis | / | 0.702 | |
| 1m4d | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.700 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.699 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.699 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.699 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.696 | |
| 1kux | CA3 | Serotonin N-acetyltransferase | / | 0.695 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.694 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.687 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.686 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.682 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.678 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.670 | |
| 2zw4 | COA | Bleomycin acetyltransferase | / | 0.670 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.670 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.669 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.667 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.666 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.662 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.661 | |
| 3q33 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.661 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.661 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.657 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.657 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.657 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.651 |