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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ofg NDP Glucose--fructose oxidoreductase 1.1.99.28

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 1.529
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 1.251
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 1.246
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 1.217
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 1.214
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 1.194
5a02 NAPGlucose-fructose oxidoreductase / 1.050
5a04 NDPGlucose-fructose oxidoreductase / 1.048
5a06 NDPGlucose-fructose oxidoreductase / 1.042
5a05 NDPGlucose-fructose oxidoreductase / 1.012
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 0.964
1rye NDPGlucose--fructose oxidoreductase 1.1.99.28 0.946
5a03 NDPGlucose-fructose oxidoreductase / 0.895
1zh8 NAPUncharacterized protein / 0.863
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.782
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.781
2glx NDP1,5-anhydro-D-fructose reductase / 0.772
3q2k NAIProbable oxidoreductase / 0.756
1yqd NAPSinapyl alcohol dehydrogenase / 0.736
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.718
4gmg NAPYersiniabactin biosynthetic protein YbtU / 0.718
5bsg NAPPyrroline-5-carboxylate reductase / 0.703
3wbf NAPMeso-diaminopimelate D-dehydrogenase / 0.702
5bsf NADPyrroline-5-carboxylate reductase / 0.702
3m2t NADProbable dehydrogenase / 0.693
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.692
2rcy NAPPyrroline-5-carboxylate reductase / 0.692
3cea NADMyo-inositol 2-dehydrogenase-like (Promiscuous) / 0.688
3rbv NAPSugar 3-ketoreductase / 0.681
3nt2 NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.679
1gq2 NAPNADP-dependent malic enzyme 1.1.1.40 0.674
3ec7 NADInositol 2-dehydrogenase / 0.674
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.669
2h63 NAPBiliverdin reductase A 1.3.1.24 0.668
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.668
3wfj NAD2-dehydropantoate 2-reductase / 0.667
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.665
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 0.665
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.665
4xgi NADGlutamate dehydrogenase / 0.665
1p0f NAPNADP-dependent alcohol dehydrogenase 1.1.1.2 0.663
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.658
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.658
3wbb NAPMeso-diaminopimelate D-dehydrogenase / 0.658
1agn NADAlcohol dehydrogenase class 4 mu/sigma chain 1.1.1.1 0.657
1piw NAPNADP-dependent alcohol dehydrogenase 6 1.1.1.2 0.653
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.653