Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nqv LMZ 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nqv LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 1.035
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.995
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.994
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.971
1kyx CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.907
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.862
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.856
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.830
2a59 LMZ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.811
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.807
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.800
1zis INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.798
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.786
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.777
1t13 INI6,7-dimethyl-8-ribityllumazine synthase 2 / 0.773
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.768
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.766
1rvv INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.765
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.745
2f59 INI6,7-dimethyl-8-ribityllumazine synthase 1 / 0.736
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.735
2obx INI6,7-dimethyl-8-ribityllumazine synthase 2 2.5.1.78 0.722
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.719
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.710
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.671
2zfa FMNLactate oxidase / 0.670
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.668
2c9d PHR6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.659
4iil RBFMembrane lipoprotein TpN38(b) / 0.652
2j6x FMNLactate oxidase / 0.650