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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lri CLR Beta-elicitin cryptogein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lri CLRBeta-elicitin cryptogein / 1.235
2aib ERGBeta-elicitin cinnamomin / 0.948
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4boe CLRJapanin / 0.737
2pio DHTAndrogen receptor / 0.716
4oed DHTAndrogen receptor / 0.713
3gyu DL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.709
4ofr DHTAndrogen receptor / 0.709
2pkl DHTAndrogen receptor / 0.708
1lho AOMSex hormone-binding globulin / 0.703
5dxg ESTEstrogen receptor / 0.703
1t74 DHTAndrogen receptor / 0.701
4ofu DHTAndrogen receptor / 0.696
1t7t DHTAndrogen receptor / 0.695
2ylp TESAndrogen receptor / 0.695
4oey DHTAndrogen receptor / 0.695
1t79 DHTAndrogen receptor / 0.694
1zhw HC2Oxysterol-binding protein homolog 4 / 0.694
2ama DHTAndrogen receptor / 0.691
2pix DHTAndrogen receptor / 0.689
1gwr ESTEstrogen receptor / 0.688
3gki CLRNiemann-Pick C1 protein / 0.687
1t73 DHTAndrogen receptor / 0.686
2piv DHTAndrogen receptor / 0.686
2pip DHTAndrogen receptor / 0.682
4oez DHTAndrogen receptor / 0.682
1t63 DHTAndrogen receptor / 0.681
2pir DHTAndrogen receptor / 0.678
4q0a 4OAVitamin D3 receptor A / 0.678
2q7k TESAndrogen receptor / 0.677
3ols ESTEstrogen receptor beta / 0.675
4j24 ESTEstrogen receptor beta / 0.674
2pit DHTAndrogen receptor / 0.671
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.670
4qe6 JN3Bile acid receptor / 0.670
1g50 ESTEstrogen receptor / 0.668
2piu DHTAndrogen receptor / 0.668
1t7r DHTAndrogen receptor / 0.667
2ocf ESTEstrogen receptor / 0.667
2piq DHTAndrogen receptor / 0.667
4oea DHTAndrogen receptor / 0.665
1t5z DHTAndrogen receptor / 0.663
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.663
2y00 Y01Beta-1 adrenergic receptor / 0.663
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.663
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2q9f C3SCholesterol 24-hydroxylase / 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4j6b PLOCytochrome P450 monooxygenase / 0.660
4y8w STRSteroid 21-hydroxylase / 0.656
3s79 ASDAromatase 1.14.14.14 0.655
2b01 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.654
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.654
2j7x ESTEstrogen receptor beta / 0.652
3nuv ASDSteroid Delta-isomerase 5.3.3.1 0.651