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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lrh NLA Auxin-binding protein 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lrh NLAAuxin-binding protein 1 / 0.890
2bri ANPUridylate kinase 2.7.4.22 0.660
2xi3 GTPGenome polyprotein 2.7.7.48 0.660
2zue ANPArginine--tRNA ligase 6.1.1.19 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.660
4g01 GDPRas-related protein RABF2b / 0.660
4jjz ADPFormate--tetrahydrofolate ligase / 0.660
4ldj GDPGTPase KRas / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.660
4yqf GDPSeptin-9 / 0.660
4z54 GDPNeuronal-specific septin-3 / 0.660
5cyo GDPSeptin-9 / 0.660