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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1loo GTP Adenylosuccinate synthetase isozyme 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1loo GTPAdenylosuccinate synthetase isozyme 1 / 0.885
1rj9 GCPSignal recognition particle receptor FtsY / 0.806
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.781
2j7p GNPSignal recognition particle protein / 0.779
2j7p GNPSignal recognition particle receptor FtsY / 0.779
5l3s GNPSignal recognition particle receptor FtsY / 0.771
1okk GCPSignal recognition particle protein / 0.757
1okk GCPSignal recognition particle receptor FtsY / 0.757
1dj2 GDPAdenylosuccinate synthetase, chloroplastic / 0.728
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.718
1cs4 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.717
1azt GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.714
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.712
1u0h GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.707
1mf0 GDPAdenylosuccinate synthetase isozyme 1 / 0.704
1dj3 GDPAdenylosuccinate synthetase, chloroplastic / 0.701
3onw GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.695
1gil GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.693
4oi4 ATPmRNA cleavage and polyadenylation factor CLP1 / 0.692
1esn ANPPantothenate kinase 2.7.1.33 0.682
3qi2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.681
4g01 GDPRas-related protein RABF2b / 0.672
4mit GTPRho-related protein racC / 0.671
1gia GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.669
1gwn GTPRho-related GTP-binding protein RhoE / 0.668
1svw GTPProbable GTP-binding protein EngB / 0.667
1hop GCPAdenylosuccinate synthetase / 0.666
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.664
3c15 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.663
2c5l GTPGTPase HRas / 0.660
2qtv GNPSmall COPII coat GTPase SAR1 3.6.5 0.660
3c16 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.659
3cx8 GSPGuanine nucleotide-binding protein subunit alpha-13 / 0.659
2gvd GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.656
4ko8 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.656
1yra GDPGPN-loop GTPase PAB0955 / 0.653
4cvm ANPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase / 0.651
1y3a GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.650
2ov2 GCPRas-related C3 botulinum toxin substrate 3 / 0.650
5ckw ANPUncharacterized protein / 0.650