2.490 Å
X-ray
2015-07-15
Name: | Uncharacterized protein |
---|---|
ID: | Q5WZW9_LEGPL |
AC: | Q5WZW9 |
Organism: | Legionella pneumophila |
Reign: | Bacteria |
TaxID: | 297245 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 90.694 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG MG |
Ligandability | Volume (Å3) |
---|---|
0.467 | 749.250 |
% Hydrophobic | % Polar |
---|---|
49.10 | 50.90 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.05 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-34.0141 | -31.3449 | 9.87474 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CG2 | ILE- 79 | 4.03 | 0 | Hydrophobic |
C4' | CG2 | ILE- 79 | 3.38 | 0 | Hydrophobic |
C5' | CG | GLN- 89 | 4.17 | 0 | Hydrophobic |
C4' | CZ | PHE- 102 | 4.4 | 0 | Hydrophobic |
C1' | CE1 | PHE- 102 | 3.64 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 102 | 3.95 | 0 | Aromatic Face/Face |
O1B | NZ | LYS- 104 | 3.38 | 150.99 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 104 | 2.84 | 154.41 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 104 | 3.38 | 0 | Ionic (Protein Cationic) |
O1A | NZ | LYS- 104 | 3.76 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 104 | 2.84 | 0 | Ionic (Protein Cationic) |
N6 | O | THR- 146 | 2.85 | 138.45 | H-Bond (Ligand Donor) |
N1 | N | ILE- 148 | 2.7 | 165.7 | H-Bond (Protein Donor) |
O2' | SD | MET- 202 | 2.76 | 158.84 | Weak HBond LIG |
C2' | SD | MET- 202 | 3.77 | 0 | Hydrophobic |
C2' | CG2 | VAL- 212 | 4.48 | 0 | Hydrophobic |
O2B | MG | MG- 502 | 2.02 | 0 | Metal Acceptor |
O3A | MG | MG- 502 | 2.76 | 0 | Metal Acceptor |