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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kw6 BPY Biphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kw6 BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.935
1kw8 BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.906
1eir BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.851
1kw9 BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.835
1kmy BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.779
1lgt BP3Biphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.771
1kwc BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.759
1lkd BP6Biphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.750
3sao DBHExtracellular fatty acid-binding protein / 0.656
3w0u HPWLactoylglutathione lyase 4.4.1.5 0.652