1.950 Å
X-ray
2002-01-29
Name: | Biphenyl-2,3-diol 1,2-dioxygenase |
---|---|
ID: | BPHC_PSES1 |
AC: | P17297 |
Organism: | Pseudomonas sp. |
Reign: | Bacteria |
TaxID: | 307 |
EC Number: | 1.13.11.39 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 15.732 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | FE2 |
Ligandability | Volume (Å3) |
---|---|
0.796 | 384.750 |
% Hydrophobic | % Polar |
---|---|
45.61 | 54.39 |
According to VolSite |
HET Code: | BPY |
---|---|
Formula: | C12H10O2 |
Molecular weight: | 186.207 g/mol |
DrugBank ID: | DB02923 |
Buried Surface Area: | 72.79 % |
Polar Surface area: | 40.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
83.3393 | 38.4696 | 16.4549 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CK8 | CG2 | VAL- 147 | 4.06 | 0 | Hydrophobic |
CK6 | CD1 | ILE- 172 | 3.81 | 0 | Hydrophobic |
CK9 | CD1 | ILE- 174 | 4.06 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 240 | 3.41 | 0 | Aromatic Face/Face |
CK5 | CB | HIS- 240 | 4.06 | 0 | Hydrophobic |
OK2 | OH | TYR- 249 | 2.6 | 163.4 | H-Bond (Protein Donor) |
CK1 | CB | THR- 280 | 3.85 | 0 | Hydrophobic |
CKC | CG2 | THR- 280 | 3.73 | 0 | Hydrophobic |
OK1 | FE | FE2- 301 | 2.17 | 0 | Metal Acceptor |
OK2 | FE | FE2- 301 | 2.02 | 0 | Metal Acceptor |