2.100 Å
X-ray
2002-01-29
Name: | Biphenyl-2,3-diol 1,2-dioxygenase |
---|---|
ID: | BPHC_PSES1 |
AC: | P17297 |
Organism: | Pseudomonas sp. |
Reign: | Bacteria |
TaxID: | 307 |
EC Number: | 1.13.11.39 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 14.344 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.121 | 529.875 |
% Hydrophobic | % Polar |
---|---|
49.68 | 50.32 |
According to VolSite |
HET Code: | BPY |
---|---|
Formula: | C12H10O2 |
Molecular weight: | 186.207 g/mol |
DrugBank ID: | DB02923 |
Buried Surface Area: | 71.17 % |
Polar Surface area: | 40.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
83.2249 | 38.722 | 16.432 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CK8 | CG2 | VAL- 147 | 4.09 | 0 | Hydrophobic |
CK9 | CG1 | VAL- 147 | 4.42 | 0 | Hydrophobic |
CK6 | CD1 | ILE- 172 | 3.87 | 0 | Hydrophobic |
CK9 | CD1 | ILE- 174 | 4.07 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 240 | 3.39 | 0 | Aromatic Face/Face |
CK5 | CB | HIS- 240 | 3.98 | 0 | Hydrophobic |
OK2 | OH | TYR- 249 | 2.85 | 153.33 | H-Bond (Protein Donor) |
CK1 | CB | THR- 280 | 4.02 | 0 | Hydrophobic |
CKC | CG2 | THR- 280 | 3.94 | 0 | Hydrophobic |