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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j21 ATP Argininosuccinate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1j21 ATPArgininosuccinate synthase / 0.931
1j1z ATPArgininosuccinate synthase / 0.875
1kh2 ATPArgininosuccinate synthase / 0.851
1kor ANPArgininosuccinate synthase / 0.829
1kh3 ANPArgininosuccinate synthase / 0.783
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.706
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.705
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.693
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.689
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.686
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.682
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.680
2ejz SAHDiphthine synthase / 0.678
2owg SAHDiphthine synthase / 0.676
3rk1 ATPN-type ATP pyrophosphatase superfamily / 0.676
2cx8 SAHRibosomal RNA small subunit methyltransferase E / 0.674
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.674
2eeq SAHDiphthine synthase / 0.672
4cng SAHSpoU rRNA methylase / 0.672
2dek SAHDiphthine synthase / 0.671
2egs SAHDiphthine synthase / 0.671
2el0 SAHDiphthine synthase / 0.671
2z08 ATPUniversal stress protein family / 0.671
1wng SAHDiphthine synthase / 0.670
1mjh ATPUniversal stress protein MJ0577 / 0.669
4x3l MTARNA 2'-O ribose methyltransferase / 0.669
2dsi SAHDiphthine synthase / 0.668
3tw6 ADPPyruvate carboxylase / 0.667
3nut SAHPrecorrin-3 methylase / 0.664
2ybo SAHMethyltransferase / 0.662
4cnf MTASpoU rRNA methylase / 0.662
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.661
2hux SAHDiphthine synthase / 0.659
5ahw CMPUniversal stress protein family protein, putative / 0.657
2e8h SAHDiphthine synthase / 0.656
2huv SAHDiphthine synthase / 0.656
2owv SAHDiphthine synthase / 0.656
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.654
2ek2 SAHDiphthine synthase / 0.654
2huq SAHDiphthine synthase / 0.654
2hut SAHDiphthine synthase / 0.654
3ab8 ATPUncharacterized protein / 0.654
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.654
2p5c SAHDiphthine synthase / 0.652
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.652