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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i12 ACO Glucosamine 6-phosphate N-acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 1.454
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 1.099
2cy2 ACOProbable acetyltransferase / 0.963
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.904
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.892
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.875
1b87 ACOAac(6')-Ii protein / 0.874
2jdd ACOProbable acetyltransferase / 0.865
1n71 COAAac(6')-Ii protein / 0.849
1cjw COTSerotonin N-acetyltransferase / 0.847
4jwp ACOGCN5-related N-acetyltransferase / 0.844
1qsm ACOHistone acetyltransferase HPA2 / 0.843
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.843
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.837
2bsw CAOProbable acetyltransferase / 0.833
2cns ACORibosomal-protein-alanine acetyltransferase / 0.832
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.831
1kuy COTSerotonin N-acetyltransferase / 0.824
3exn ACOProbable acetyltransferase / 0.824
1ib1 COTSerotonin N-acetyltransferase / 0.821
2jdc CAOProbable acetyltransferase / 0.818
3gy9 COAGCN5-related N-acetyltransferase / 0.813
3gya COAGCN5-related N-acetyltransferase / 0.809
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.799
2a4n COAAac(6')-Ii protein / 0.797
4r3k COAN-alpha-acetyltransferase 2.3.1 0.796
3r1k COAN-acetyltransferase Eis / 0.794
1l0c COTSerotonin N-acetyltransferase / 0.790
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.785
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.784
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.784
2rc4 ACOHistone acetyltransferase KAT6A / 0.778
3zj0 ACOPutative acetyltransferase OgpAT / 0.778
1fy7 COAHistone acetyltransferase ESA1 / 0.776
4ava ACOAcetyltransferase Pat 2.3.1 0.775
1mja COAHistone acetyltransferase ESA1 / 0.774
2b3v ACODiamine acetyltransferase 1 / 0.770
2ozu ACOHistone acetyltransferase KAT6A / 0.767
1kuv CA5Serotonin N-acetyltransferase / 0.766
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.765
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.764
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.760
2cnt COARibosomal-protein-alanine acetyltransferase / 0.760
1mjb ACOHistone acetyltransferase ESA1 / 0.754
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.754
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.753
2y0m ACOHistone acetyltransferase KAT8 / 0.751
5kf9 ACOPredicted acetyltransferase / 0.749
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.747
2r8v ACOAmino-acid acetyltransferase / 0.744
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 0.743
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.742
1mj9 COAHistone acetyltransferase ESA1 / 0.741
4cry ACOPanD regulatory factor / 0.741
2ou2 ACOHistone acetyltransferase KAT5 / 0.740
3mgd ACOPredicted acetyltransferase / 0.740
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.740
1wwz ACOUncharacterized protein / 0.738
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.736
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.735
3f0a ACOSpermidine N(1)-acetyltransferase / 0.733
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.731
4qvt ACOAcetyltransferase YpeA 2.3.1 0.731
3pgp ACOUncharacterized protein / 0.730
2bue COAAAC(6')-Ib / 0.729
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.729
5kf8 ACOPredicted acetyltransferase / 0.729
1pu9 COAHAT A1 / 0.728
5kgj ACOPredicted acetyltransferase / 0.728
5kf2 ACOPredicted acetyltransferase / 0.727
4kub COAUncharacterized protein / 0.724
1kux CA3Serotonin N-acetyltransferase / 0.721
2vqy ACOAAC(6')-Ib / 0.721
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.720
4crz ACOPanD regulatory factor / 0.718
4jxr ACOAcetyltransferase / 0.718
5kgp ACOPredicted acetyltransferase / 0.718
2fxf ACODiamine acetyltransferase 1 / 0.716
1m1d LYXHAT A1 / 0.714
3bj7 COADiamine acetyltransferase 1 / 0.712
5kgh ACOPredicted acetyltransferase / 0.709
3d2m COAAmino-acid acetyltransferase / 0.708
1j4j ACOAcetyltransferase 2.3.1 0.706
2ge3 ACOProbable acetyltransferase / 0.706
1ghe ACOAcetyltransferase 2.3.1 0.704
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.702
1qsn COAHAT A1 / 0.701
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.700
1pua COAHAT A1 / 0.698
3k9u ACOSpermidine N(1)-acetyltransferase / 0.698
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.697
1qsr ACOHAT A1 / 0.695
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.694
5kf1 ACOPredicted acetyltransferase / 0.693
4r87 COASpermidine N(1)-acetyltransferase / 0.691
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.688
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.688
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.687
2jev NHQDiamine acetyltransferase 1 / 0.686
2x7b COAN-alpha-acetyltransferase 2.3.1 0.683
1v0c ACOAAC(6')-Ib / 0.680
2psw COAN-alpha-acetyltransferase 50 / 0.679
5kf2 COAPredicted acetyltransferase / 0.679
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.678
3r95 ACOMccE protein / 0.677
5kf8 COAPredicted acetyltransferase / 0.677
2giv ACOHistone acetyltransferase KAT8 / 0.669
3te4 ACODopamine N-acetyltransferase / 0.666
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.665
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.662
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.658