Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h60 STR Pentaerythritol tetranitrate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1h60 STRPentaerythritol tetranitrate reductase / 0.919
2aba STRPentaerythritol tetranitrate reductase / 0.831
1h62 ANBPentaerythritol tetranitrate reductase / 0.781
1h61 PDNPentaerythritol tetranitrate reductase / 0.691
1kdm DHTSex hormone-binding globulin / 0.665
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.665
1xow R18Androgen receptor / 0.662
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.659
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
1y9r 1CAMineralocorticoid receptor / 0.655
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.654
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.654
1irj CPSProtein S100-A9 / 0.653
4e5f 0N7Polymerase acidic protein / 0.653
2ao6 R18Androgen receptor / 0.652
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.651
2w8y 486Progesterone receptor / 0.651