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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gwq ZTW Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gwq ZTWEstrogen receptor / 0.982
1x7e 244Estrogen receptor / 0.802
1x7r GENEstrogen receptor / 0.799
2qa8 GENEstrogen receptor / 0.775
4pp6 STLEstrogen receptor / 0.770
2qe4 JJ3Estrogen receptor / 0.752
4pxm ESTEstrogen receptor / 0.746
4iv2 1GREstrogen receptor / 0.728
1zaf 789Estrogen receptor beta / 0.722
2jf9 OHTEstrogen receptor / 0.721
1x76 697Estrogen receptor beta / 0.710
2j7x ESTEstrogen receptor beta / 0.709
4iu7 1GMEstrogen receptor / 0.702
2nv7 555Estrogen receptor beta / 0.700
4j26 ESTEstrogen receptor beta / 0.697
1x78 244Estrogen receptor beta / 0.692
4j24 ESTEstrogen receptor beta / 0.681
2yat EEUEstrogen receptor / 0.679
3oll ESTEstrogen receptor beta / 0.679
4iv4 1GSEstrogen receptor / 0.670
1x7b 041Estrogen receptor beta / 0.669
3q95 ESLEstrogen receptor / 0.669
4e5f 0N7Polymerase acidic protein / 0.664
1x7j GENEstrogen receptor beta / 0.663
4dma 0L8Estrogen receptor / 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1u9e 397Estrogen receptor beta / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
3l03 4OHEstrogen receptor / 0.658
5hyr ESTEstrogen receptor / 0.654
3uud ESTEstrogen receptor / 0.653
2bj4 OHTEstrogen receptor / 0.651
4e5l DBHPolymerase acidic protein / 0.651