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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1go2 FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.378
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.333
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.315
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.308
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.296
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.292
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.287
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.279
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.275
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.273
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.272
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.267
1que FADFerredoxin--NADP reductase 1.18.1.2 1.254
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.248
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.241
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.225
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.220
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.204
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.196
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.192
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.190
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.189
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.185
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.184
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.166
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.159
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.158
3vo2 FADFerredoxin--NADP reductase / 1.158
1gaw FADFerredoxin / 1.157
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.154
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.153
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.148
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.140
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.115
3w5u FADFerredoxin / 1.113
2rc5 FADFerredoxin--NADP reductase / 1.109
2rc6 FADFerredoxin--NADP reductase / 1.107
1gaq FADFerredoxin / 1.096
1sm4 FADFerredoxin--NADP reductase / 1.046
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.029
3qfs FADNADPH--cytochrome P450 reductase / 1.026
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.024
4yaf FADNADPH--cytochrome P450 reductase / 1.018
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.014
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.994
3qfc FADNADPH--cytochrome P450 reductase / 0.981
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.971
3qft FADNADPH--cytochrome P450 reductase / 0.970
3ojw FADNADPH--cytochrome P450 reductase / 0.959
1ja1 FADNADPH--cytochrome P450 reductase / 0.958
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.955
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.951
4y9r FADNADPH--cytochrome P450 reductase / 0.950
4yau FADNADPH--cytochrome P450 reductase / 0.947
4y7c FADNADPH--cytochrome P450 reductase / 0.945
4y9u FADNADPH--cytochrome P450 reductase / 0.935
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.931
3qfr FADNADPH--cytochrome P450 reductase / 0.902
1tll FADNitric oxide synthase, brain 1.14.13.39 0.877
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.876
1cqx FADFlavohemoprotein / 0.873
1ja0 FADNADPH--cytochrome P450 reductase / 0.863
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.856
3qe2 FADNADPH--cytochrome P450 reductase / 0.854
2bn4 FADNADPH--cytochrome P450 reductase / 0.852
1j9z FADNADPH--cytochrome P450 reductase / 0.847
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.839
3ojx FADNADPH--cytochrome P450 reductase / 0.838
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.829
4yao FADNADPH--cytochrome P450 reductase / 0.817
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.808
3fpk FADFerredoxin-NADP reductase / 0.807
1amo FADNADPH--cytochrome P450 reductase / 0.806
2pia FMNPhthalate dioxygenase reductase / 0.803
2eix FADNADH-cytochrome b5 reductase / 0.797
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.788
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.785
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.771
2bf4 FADNADPH--cytochrome P450 reductase / 0.764
2gpj FADSiderophore-interacting protein / 0.752
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.750
1gvh FADFlavohemoprotein / 0.743
2vnj FADNADPH:ferredoxin reductase / 0.734
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.729
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.711
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.707
3e4v FMNUncharacterized protein / 0.703
2iml FMNUncharacterized protein / 0.702
3q9t FAYUncharacterized protein / 0.693
2bpo FADNADPH--cytochrome P450 reductase / 0.692
2ptf FMNUncharacterized protein MTH_863 / 0.692
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.689
3in6 FMNUncharacterized protein / 0.687
4ees FMNPhototropin-2 2.7.11.1 0.687
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.686
2vnh FADNADPH:ferredoxin reductase / 0.684
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.677
1wlk FMNFMN-binding protein / 0.676
3hjk FADVivid PAS protein VVD / 0.676
1v5e FADPyruvate oxidase / 0.673
2vnk FADNADPH:ferredoxin reductase / 0.669
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.664
3a6q FMNFMN-binding protein / 0.664
4b4d FADFerredoxin-NADP reductase / 0.663
2z6c FMNPhototropin-1 2.7.11.1 0.662
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.660
2bgi FADNADPH:ferredoxin reductase / 0.659
4eet FMNPhototropin-2 2.7.11.1 0.659
3lsh FADPyranose 2-oxidase / 0.658
2bgj FADNADPH:ferredoxin reductase / 0.657
1eje FMNProtein MTH_152 / 0.655
3a20 FMNFMN-binding protein / 0.655
3crz FADFerredoxin--NADP+ reductase / 0.655
3vy2 FMNFMN-binding protein / 0.653
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.652
2qdx FADFerredoxin--NADP+ reductase / 0.651
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.650