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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gjr FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.386
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.282
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.258
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.254
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.252
1que FADFerredoxin--NADP reductase 1.18.1.2 1.248
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.242
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.239
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.235
3vo2 FADFerredoxin--NADP reductase / 1.234
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.233
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.228
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.225
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.225
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.216
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.214
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.210
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.209
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.205
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.204
1gaw FADFerredoxin / 1.203
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.201
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.199
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.192
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.183
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.181
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.179
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.163
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.150
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.114
2rc6 FADFerredoxin--NADP reductase / 1.114
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.103
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.101
3w5u FADFerredoxin / 1.087
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.080
1gaq FADFerredoxin / 1.073
2rc5 FADFerredoxin--NADP reductase / 1.054
1w87 FADFerredoxin--NADP reductase 1.18.1.2 1.051
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.048
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.035
1sm4 FADFerredoxin--NADP reductase / 0.995
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.993
3qfs FADNADPH--cytochrome P450 reductase / 0.993
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.993
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.982
1ja1 FADNADPH--cytochrome P450 reductase / 0.980
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.980
4yaf FADNADPH--cytochrome P450 reductase / 0.979
4y9u FADNADPH--cytochrome P450 reductase / 0.978
4y7c FADNADPH--cytochrome P450 reductase / 0.975
3qfc FADNADPH--cytochrome P450 reductase / 0.968
3ojw FADNADPH--cytochrome P450 reductase / 0.966
1ja0 FADNADPH--cytochrome P450 reductase / 0.962
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.937
3qfr FADNADPH--cytochrome P450 reductase / 0.934
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.928
4yau FADNADPH--cytochrome P450 reductase / 0.928
2bf4 FADNADPH--cytochrome P450 reductase / 0.927
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.907
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.905
1tll FADNitric oxide synthase, brain 1.14.13.39 0.900
3qft FADNADPH--cytochrome P450 reductase / 0.890
1cqx FADFlavohemoprotein / 0.887
2bpo FADNADPH--cytochrome P450 reductase / 0.880
1j9z FADNADPH--cytochrome P450 reductase / 0.878
1amo FADNADPH--cytochrome P450 reductase / 0.855
3ojx FADNADPH--cytochrome P450 reductase / 0.847
3qe2 FADNADPH--cytochrome P450 reductase / 0.843
2eix FADNADH-cytochrome b5 reductase / 0.842
2bn4 FADNADPH--cytochrome P450 reductase / 0.840
4yao FADNADPH--cytochrome P450 reductase / 0.834
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.816
1gvh FADFlavohemoprotein / 0.811
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.807
4y9r FADNADPH--cytochrome P450 reductase / 0.797
3fpk FADFerredoxin-NADP reductase / 0.792
4fk8 FADFerredoxin--NADP reductase / 0.783
2pia FMNPhthalate dioxygenase reductase / 0.781
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.776
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.769
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.757
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.756
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.748
2gpj FADSiderophore-interacting protein / 0.744
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.740
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.725
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.711
4k1x FADNADPH:ferredoxin reductase / 0.706
2hq9 FADMll6688 protein / 0.698
2ptf FMNUncharacterized protein MTH_863 / 0.698
3e4v FMNUncharacterized protein / 0.696
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.695
3r5z F42Uncharacterized protein / 0.695
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.692
3in6 FMNUncharacterized protein / 0.691
3q9t FAYUncharacterized protein / 0.685
4rhe FMNFlavin prenyltransferase UbiX / 0.684
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.680
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.680
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.678
3pl8 FADPyranose 2-oxidase / 0.678
5j60 FADThioredoxin reductase / 0.676
1eje FMNProtein MTH_152 / 0.673
3ka7 FADPutative oxidoreductase / 0.673
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.669
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.669
2igo FADPyranose 2-oxidase / 0.667
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.667
3k4c FADPyranose 2-oxidase / 0.665
3lsh FADPyranose 2-oxidase / 0.665
1wlk FMNFMN-binding protein / 0.664
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.664
2bgj FADNADPH:ferredoxin reductase / 0.661
3lsi FADPyranose 2-oxidase / 0.661
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.659
2y48 FADLysine-specific histone demethylase 1A 1 0.658
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.656
2yg3 FADPutrescine oxidase / 0.654
3a3g DLZLumazine protein / 0.654
3v76 FDAUncharacterized protein / 0.654
2vnh FADNADPH:ferredoxin reductase / 0.651