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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dlj UGA UDP-glucose 6-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dlj UGAUDP-glucose 6-dehydrogenase / 1.453
1dli UDXUDP-glucose 6-dehydrogenase / 1.192
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.895
4edf UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.865
2y0d UGAUDP-glucose dehydrogenase / 0.831
2qg4 UGAUDP-glucose 6-dehydrogenase 1.1.1.22 0.825
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.780
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.774
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.767
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.710
1mfz GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.704
4xr9 TMPCalS8 / 0.697
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.685
4to5 TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.682
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.676
1het NADAlcohol dehydrogenase E chain 1.1.1.1 0.660
1sb9 UPGWbpP / 0.656
4tnq TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.652
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.652
4tny DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.651
4tnp DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.650