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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cju FOK Adenylate cyclase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cju FOKAdenylate cyclase type 2 / 0.954
1cju FOKAdenylate cyclase type 5 / 0.954
1cs4 FOKAdenylate cyclase type 2 / 0.929
1cs4 FOKAdenylate cyclase type 5 / 0.929
1cjt FOKAdenylate cyclase type 2 / 0.917
1cjt FOKAdenylate cyclase type 5 / 0.917
1cjv FOKAdenylate cyclase type 2 / 0.915
1cjv FOKAdenylate cyclase type 5 / 0.915
1cul FOKAdenylate cyclase type 2 / 0.912
1cul FOKAdenylate cyclase type 5 / 0.912
1cjk FOKAdenylate cyclase type 2 / 0.906
1cjk FOKAdenylate cyclase type 5 / 0.906
3c15 FOKAdenylate cyclase type 2 / 0.878
3c15 FOKAdenylate cyclase type 5 / 0.878
3maa FKPAdenylate cyclase type 2 / 0.860
3maa FKPAdenylate cyclase type 5 / 0.860
1u0h FOKAdenylate cyclase type 2 / 0.855
1u0h FOKAdenylate cyclase type 5 / 0.855
3c16 FOKAdenylate cyclase type 2 / 0.801
3c16 FOKAdenylate cyclase type 5 / 0.801
2gvd FKPAdenylate cyclase type 2 / 0.761
2gvd FKPAdenylate cyclase type 5 / 0.761
3c14 FOKAdenylate cyclase type 2 / 0.753
3c14 FOKAdenylate cyclase type 5 / 0.753
4e5i 0N9Polymerase acidic protein / 0.744
1tl7 FOKAdenylate cyclase type 2 / 0.729
1tl7 FOKAdenylate cyclase type 5 / 0.729
4e5f 0N7Polymerase acidic protein / 0.660