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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bjk FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.374
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.329
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.320
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.305
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.294
1que FADFerredoxin--NADP reductase 1.18.1.2 1.294
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.292
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.286
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.286
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.263
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.258
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.254
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.251
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.240
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.237
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.226
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.223
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.219
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.218
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.215
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.204
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.196
1gaw FADFerredoxin / 1.190
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.187
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.172
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.168
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.166
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.151
3vo2 FADFerredoxin--NADP reductase / 1.150
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.145
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.141
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.127
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.115
2rc5 FADFerredoxin--NADP reductase / 1.078
3w5u FADFerredoxin / 1.075
2rc6 FADFerredoxin--NADP reductase / 1.044
1sm4 FADFerredoxin--NADP reductase / 1.040
3qfs FADNADPH--cytochrome P450 reductase / 1.032
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.028
3qfc FADNADPH--cytochrome P450 reductase / 1.010
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.003
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.000
1gaq FADFerredoxin / 0.995
3qe2 FADNADPH--cytochrome P450 reductase / 0.994
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.976
3qft FADNADPH--cytochrome P450 reductase / 0.962
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.954
4y9u FADNADPH--cytochrome P450 reductase / 0.951
1ja1 FADNADPH--cytochrome P450 reductase / 0.935
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.930
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.929
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.926
3qfr FADNADPH--cytochrome P450 reductase / 0.917
4yaf FADNADPH--cytochrome P450 reductase / 0.911
4y7c FADNADPH--cytochrome P450 reductase / 0.900
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.884
4yau FADNADPH--cytochrome P450 reductase / 0.878
3ojw FADNADPH--cytochrome P450 reductase / 0.870
1ja0 FADNADPH--cytochrome P450 reductase / 0.867
1tll FADNitric oxide synthase, brain 1.14.13.39 0.865
1j9z FADNADPH--cytochrome P450 reductase / 0.863
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.844
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.840
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.840
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.832
1cqx FADFlavohemoprotein / 0.829
2eix FADNADH-cytochrome b5 reductase / 0.827
4y9r FADNADPH--cytochrome P450 reductase / 0.815
3ojx FADNADPH--cytochrome P450 reductase / 0.800
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.795
1amo FADNADPH--cytochrome P450 reductase / 0.788
2bf4 FADNADPH--cytochrome P450 reductase / 0.778
4yao FADNADPH--cytochrome P450 reductase / 0.771
2pia FMNPhthalate dioxygenase reductase / 0.767
2gpj FADSiderophore-interacting protein / 0.762
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.752
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.748
3fpk FADFerredoxin-NADP reductase / 0.748
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.745
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.738
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.731
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.730
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.730
2vnh FADNADPH:ferredoxin reductase / 0.730
1gvh FADFlavohemoprotein / 0.718
2bn4 FADNADPH--cytochrome P450 reductase / 0.717
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.717
4k1x FADNADPH:ferredoxin reductase / 0.706
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.705
2vnj FADNADPH:ferredoxin reductase / 0.705
3q9t FAYUncharacterized protein / 0.697
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.693
4gut FADLysine-specific histone demethylase 1B 1 0.692
3a20 FMNFMN-binding protein / 0.691
3ka7 FADPutative oxidoreductase / 0.690
2iml FMNUncharacterized protein / 0.688
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.684
3a6r FMNFMN-binding protein / 0.684
3e4v FMNUncharacterized protein / 0.683
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.683
1wlk FMNFMN-binding protein / 0.681
3v76 FDAUncharacterized protein / 0.678
4fk8 FADFerredoxin--NADP reductase / 0.677
2ptf FMNUncharacterized protein MTH_863 / 0.676
3vy2 FMNFMN-binding protein / 0.675
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.672
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.672
4u8i FDAUDP-galactopyranose mutase / 0.672
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.672
3pft FMNFlavin reductase / 0.671
3pl8 FADPyranose 2-oxidase / 0.670
1h83 FADPolyamine oxidase 1.5.3.14 0.669
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.668
2b9y FADPutative aminooxidase / 0.665
2bgi FADNADPH:ferredoxin reductase / 0.665
2vnk FADNADPH:ferredoxin reductase / 0.664
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.662
1eje FMNProtein MTH_152 / 0.661
3kyb FADUDP-galactopyranose mutase 5.4.99.9 0.660
3amf FMNFMN-binding protein / 0.659
2bgj FADNADPH:ferredoxin reductase / 0.658
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.658
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.656
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.655
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.653
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.651
3crz FADFerredoxin--NADP+ reductase / 0.650
4jic FMNGTN Reductase / 0.650
5hy5 FADTryptophan 6-halogenase / 0.650