Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b8o IMH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.866
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.829
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.824
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.776
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.766
3k8o 229Purine nucleoside phosphorylase 2.4.2.1 0.734
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.726
2p4s DIHAGAP005945-PA / 0.723
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.714
1v45 3DGPurine nucleoside phosphorylase 2.4.2.1 0.708
1rct NOSPurine nucleoside phosphorylase 2.4.2.1 0.706
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.695
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.688
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.683
1yry MSGPurine nucleoside phosphorylase 2.4.2.1 0.677
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.677
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.676
1pf7 IMHPurine nucleoside phosphorylase 2.4.2.1 0.664
1rfg GMPPurine nucleoside phosphorylase 2.4.2.1 0.659
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.659
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.652