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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1akw FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1akw FMNFlavodoxin / 1.161
1azl FMNFlavodoxin / 1.119
1akr FMNFlavodoxin / 1.115
1c7f FMNFlavodoxin / 1.063
1wsb FMNFlavodoxin / 1.053
1j8q FMNFlavodoxin / 1.037
1aku FMNFlavodoxin / 1.027
1xyv FMNFlavodoxin / 1.014
2fx2 FMNFlavodoxin / 1.012
3f6s FMNFlavodoxin / 0.993
1j9g FMNFlavodoxin / 0.965
5tgz FMNCannabinoid receptor 1 / 0.950
1czn FMNFlavodoxin / 0.899
1ahn FMNFlavodoxin 1 / 0.883
4fx2 FMNFlavodoxin / 0.882
1ofv FMNFlavodoxin / 0.881
3esz FMNFlavodoxin / 0.879
1fx1 FMNFlavodoxin / 0.868
3f6r FMNFlavodoxin / 0.866
1xyy FMNFlavodoxin / 0.861
2v5u FMNFlavodoxin / 0.852
3kap FMNFlavodoxin / 0.846
2v5v FMNFlavodoxin / 0.843
3f90 FMNFlavodoxin / 0.838
1yob FMNFlavodoxin 2 / 0.784
5xra FMNCannabinoid receptor 1 / 0.778
3qe2 FMNNADPH--cytochrome P450 reductase / 0.777
2fcr FMNFlavodoxin / 0.769
2bf4 FMNNADPH--cytochrome P450 reductase / 0.765
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.765
5xr8 FMNCannabinoid receptor 1 / 0.765
2bn4 FMNNADPH--cytochrome P450 reductase / 0.763
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.762
1amo FMNNADPH--cytochrome P450 reductase / 0.761
1ja0 FMNNADPH--cytochrome P450 reductase / 0.759
4oxx FMNCindoxin / 0.759
4yao FMNNADPH--cytochrome P450 reductase / 0.757
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.743
4y7c FMNNADPH--cytochrome P450 reductase / 0.743
5fx2 FMNFlavodoxin / 0.742
1bu5 RBFFlavodoxin / 0.734
1fue FMNFlavodoxin / 0.734
1ycf FMNNitric oxide reductase 1 0.733
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.731
1ych FMNNitric oxide reductase 1 0.730
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.726
2ohj FMNType A flavoprotein FprA 1 0.717
3n39 FMNProtein NrdI / 0.716
1j9z FMNNADPH--cytochrome P450 reductase / 0.713
3ojw FMNNADPH--cytochrome P450 reductase / 0.711
3ojx FMNNADPH--cytochrome P450 reductase / 0.710
3qfr FMNNADPH--cytochrome P450 reductase / 0.709
1ycg FMNNitric oxide reductase 1 0.708
2ohi FMNType A flavoprotein FprA 1 0.707
4bmp FMNProtein NrdI / 0.706
3n3a FMNProtein NrdI / 0.699
3esy FMNFlavodoxin / 0.697
4bmo FMNProtein NrdI / 0.692
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.689
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.689
2ohh FMNType A flavoprotein FprA 1 0.688
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.676
2w5u FMNFlavodoxin / 0.675
2q9u FMNA-type flavoprotein / 0.674
3n3b FMNProtein NrdI / 0.672
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.670
2mok FMNFlavodoxin 1 / 0.669
3e2s FADBifunctional protein PutA 1.5.5.2 0.665
3kaq FMNFlavodoxin / 0.665
1ja1 FMNNADPH--cytochrome P450 reductase / 0.663
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.663
2b3d FADModulator of drug activity B / 0.662
3klb FMNUncharacterized protein / 0.662
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.660
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.659
4cw5 FMNDfnA / 0.659
5af7 FADAcyl-CoA dehydrogenase / 0.659
3lcm FADPutative oxidoreductase / 0.658
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.656
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.656
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.656
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.654
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.653
4j8p FMNFlavodoxin / 0.653
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.650
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.650