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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1akr FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1akr FMNFlavodoxin / 1.192
1azl FMNFlavodoxin / 1.151
1akw FMNFlavodoxin / 1.115
1c7f FMNFlavodoxin / 1.093
1wsb FMNFlavodoxin / 1.088
2fx2 FMNFlavodoxin / 1.047
1xyv FMNFlavodoxin / 1.043
3f6s FMNFlavodoxin / 1.035
1j8q FMNFlavodoxin / 1.028
1aku FMNFlavodoxin / 1.025
1j9g FMNFlavodoxin / 1.019
1xyy FMNFlavodoxin / 0.945
4fx2 FMNFlavodoxin / 0.935
1ahn FMNFlavodoxin 1 / 0.933
3esz FMNFlavodoxin / 0.928
1czn FMNFlavodoxin / 0.924
2v5u FMNFlavodoxin / 0.912
5tgz FMNCannabinoid receptor 1 / 0.911
1ofv FMNFlavodoxin / 0.897
3f90 FMNFlavodoxin / 0.896
3f6r FMNFlavodoxin / 0.882
1fx1 FMNFlavodoxin / 0.877
3esy FMNFlavodoxin / 0.853
2v5v FMNFlavodoxin / 0.832
3kap FMNFlavodoxin / 0.824
5xra FMNCannabinoid receptor 1 / 0.799
2fcr FMNFlavodoxin / 0.786
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.785
4oxx FMNCindoxin / 0.783
5xr8 FMNCannabinoid receptor 1 / 0.780
2bf4 FMNNADPH--cytochrome P450 reductase / 0.773
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.771
1amo FMNNADPH--cytochrome P450 reductase / 0.766
1yob FMNFlavodoxin 2 / 0.765
2bn4 FMNNADPH--cytochrome P450 reductase / 0.762
4yao FMNNADPH--cytochrome P450 reductase / 0.757
1ja0 FMNNADPH--cytochrome P450 reductase / 0.746
5fx2 FMNFlavodoxin / 0.743
2ohi FMNType A flavoprotein FprA 1 0.741
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.739
3qe2 FMNNADPH--cytochrome P450 reductase / 0.734
2ohj FMNType A flavoprotein FprA 1 0.731
2ohh FMNType A flavoprotein FprA 1 0.728
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.727
4bmp FMNProtein NrdI / 0.727
1fue FMNFlavodoxin / 0.725
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.725
3n39 FMNProtein NrdI / 0.722
4bmo FMNProtein NrdI / 0.722
1ych FMNNitric oxide reductase 1 0.716
3ojw FMNNADPH--cytochrome P450 reductase / 0.716
3qfr FMNNADPH--cytochrome P450 reductase / 0.709
3ojx FMNNADPH--cytochrome P450 reductase / 0.701
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.700
1bu5 RBFFlavodoxin / 0.698
2mok FMNFlavodoxin 1 / 0.696
4y7c FMNNADPH--cytochrome P450 reductase / 0.694
2w5u FMNFlavodoxin / 0.692
1j9z FMNNADPH--cytochrome P450 reductase / 0.685
1ycf FMNNitric oxide reductase 1 0.685
3n3b FMNProtein NrdI / 0.681
1ycg FMNNitric oxide reductase 1 0.679
3in6 FMNUncharacterized protein / 0.679
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.674
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.674
3kaq FMNFlavodoxin / 0.673
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.672
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
2q9u FMNA-type flavoprotein / 0.672
3n3a FMNProtein NrdI / 0.672
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.672
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.671
3klb FMNUncharacterized protein / 0.670
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.670
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.667
4qai FMNNADPH dehydrogenase / 0.666
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.666
3rpe FADPutative modulator of drug activity / 0.665
1ja1 FMNNADPH--cytochrome P450 reductase / 0.664
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.657
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.655
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.653
1tez HDFDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.652
3e4v FMNUncharacterized protein / 0.650