2.200 Å
X-ray
2009-05-26
Name: | Choline-phosphate cytidylyltransferase A |
---|---|
ID: | PCY1A_RAT |
AC: | P19836 |
Organism: | Rattus norvegicus |
Reign: | Eukaryota |
TaxID: | 10116 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 21.550 |
---|---|
Number of residues: | 44 |
Including | |
Standard Amino Acids: | 40 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.035 | 361.125 |
% Hydrophobic | % Polar |
---|---|
39.25 | 60.75 |
According to VolSite |
HET Code: | CDC |
---|---|
Formula: | C14H25N4O11P2 |
Molecular weight: | 487.316 g/mol |
DrugBank ID: | DB04290 |
Buried Surface Area: | 77.49 % |
Polar Surface area: | 235.94 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 13 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
-6.16058 | 44.8151 | 6.27129 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | N | ILE- 84 | 3.02 | 125.19 | H-Bond (Protein Donor) |
O3A | N | ILE- 84 | 3.3 | 158.91 | H-Bond (Protein Donor) |
O1A | N | PHE- 85 | 2.86 | 172.27 | H-Bond (Protein Donor) |
C5' | CE1 | PHE- 85 | 3.9 | 0 | Hydrophobic |
O1A | NE2 | HIS- 92 | 3.4 | 126.22 | H-Bond (Protein Donor) |
C1' | CB | ALA- 95 | 3.67 | 0 | Hydrophobic |
C4' | CB | ALA- 95 | 4.44 | 0 | Hydrophobic |
O2A | NZ | LYS- 122 | 3.25 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 122 | 2.85 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 122 | 2.85 | 145.58 | H-Bond (Protein Donor) |
O2B | NE2 | HIS- 168 | 2.61 | 163.07 | H-Bond (Protein Donor) |
O2' | OD2 | ASP- 169 | 2.6 | 145.11 | H-Bond (Ligand Donor) |
O3B | OH | TYR- 173 | 2.65 | 146.62 | H-Bond (Protein Donor) |
C14 | CE1 | TYR- 173 | 4.03 | 0 | Hydrophobic |
N3 | N | THR- 197 | 3.13 | 158.05 | H-Bond (Protein Donor) |
N4 | O | THR- 197 | 2.84 | 151.23 | H-Bond (Ligand Donor) |
N4 | O | ILE- 200 | 2.86 | 138.95 | H-Bond (Ligand Donor) |
O3' | O | HOH- 401 | 2.9 | 166.28 | H-Bond (Ligand Donor) |
O1A | O | HOH- 402 | 3.12 | 179.98 | H-Bond (Protein Donor) |
O2A | O | HOH- 405 | 2.6 | 154.96 | H-Bond (Protein Donor) |