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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hl4 CDC Choline-phosphate cytidylyltransferase A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hl4 CDCCholine-phosphate cytidylyltransferase A / 1.082
4mvc CDCCholine-phosphate cytidylyltransferase A / 0.811
1n1d C2GGlycerol-3-phosphate cytidylyltransferase 2.7.7.39 0.773
1lvg 5GPGuanylate kinase 2.7.4.8 0.663
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.663
4to5 TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.658
2bhp NAD1-pyrroline-5-carboxylate dehydrogenase / 0.657
2zgy GDPPlasmid segregation protein ParM / 0.656
2z1m GDPGDP-mannose 4,6-dehydratase / 0.654
3elb C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.651
4i9b NADPutative betaine aldehyde dehyrogenase / 0.650
5bsf NADPyrroline-5-carboxylate reductase / 0.650