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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3hl4CDCCholine-phosphate cytidylyltransferase A

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3hl4CDCCholine-phosphate cytidylyltransferase A/1.000
4mvcCDCCholine-phosphate cytidylyltransferase A/0.536
4bzbDGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.473
3elbC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.470
1tcoFK5Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.467
1tcoFK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform3.1.3.160.467
1r6uTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.464
3coy53HPantothenate synthetase6.3.2.10.464
1n1dC2GGlycerol-3-phosphate cytidylyltransferase2.7.7.390.459
5kwvANPPantothenate synthetase/0.458
2ikuLIYRenin3.4.23.150.456
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.455
4c13UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase/0.455
1n2iPAJPantothenate synthetase6.3.2.10.454
3nljH4BNitric oxide synthase, brain1.14.13.390.453
2gv8NDPThiol-specific monooxygenase1.14.130.452
1x1aSAMC-20 methyltransferase/0.451
3apwDP0Alpha-1-acid glycoprotein 2/0.451
3v0o4GWHisto-blood group ABO system transferase/0.450
1o9bNAIQuinate/shikimate dehydrogenase/0.449
1szgFNSCytochrome b2, mitochondrial1.1.2.30.449
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.449
3ziuLSSLeucyl-tRNA synthetase/0.449
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.449
4kp71UQ1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic1.1.1.2670.448
1cozCTPGlycerol-3-phosphate cytidylyltransferase2.7.7.390.447
1n2eAPCPantothenate synthetase6.3.2.10.447
3frkTQPQdtB/0.447
3gf4UPGUDP-galactopyranose mutase5.4.99.90.446
4q0kGA3Phytohormone-binding protein/0.446
1n2gAPCPantothenate synthetase6.3.2.10.445
3gwfNAPCyclohexanone monooxygenase/0.445
3jyqNADQuinate/shikimate dehydrogenase (NAD(+))/0.445
1h51FMNPentaerythritol tetranitrate reductase/0.444
4f5yC2EStimulator of interferon genes protein/0.444
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.442
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.441
1x1bSAHC-20 methyltransferase/0.441
2fxv5GPXanthine phosphoribosyltransferase2.4.2.220.441