2.300 Å
X-ray
2002-09-16
Name: | Ephrin type-A receptor 2 |
---|---|
ID: | EPHA2_HUMAN |
AC: | P29317 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.10.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 41.264 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.923 | 610.875 |
% Hydrophobic | % Polar |
---|---|
48.07 | 51.93 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 43.99 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
38.3997 | 38.2485 | 49.3733 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CG1 | ILE- 619 | 3.88 | 0 | Hydrophobic |
N3B | O | ALA- 621 | 3.08 | 148.9 | H-Bond (Ligand Donor) |
C5' | CG2 | VAL- 627 | 4.25 | 0 | Hydrophobic |
C1' | CG1 | VAL- 627 | 4.36 | 0 | Hydrophobic |
O2A | NZ | LYS- 646 | 3.48 | 0 | Ionic (Protein Cationic) |
N7 | NZ | LYS- 646 | 3.1 | 138.34 | H-Bond (Protein Donor) |
N6 | O | GLU- 693 | 2.99 | 159.92 | H-Bond (Ligand Donor) |
N1 | N | MET- 695 | 2.98 | 146.35 | H-Bond (Protein Donor) |